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SRX13799310: GSM5820511: TGFBR1 mutant replicate 2; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 22.5M spots, 5.7G bases, 1.8Gb downloads

External Id: GSM5820511_r1
Submitted by: Laboratory of Allergic Diseases, National Institute of Allergy and Infectious Diseases, National Institutes of Health
Study: TGFbR signaling in squamous epithelial cells plays a fundamental role in controlling tissue specific allergic inflammation
show Abstracthide Abstract
Allergic diseases are becoming a global health crisis. Individuals harboring loss-of-function variants in transforming growth factor beta receptor (TGFbR) have an increased prevalence of allergic disease, but the mechanisms responsible are poorly understood. We demonstrate that mice harboring a variant identified in patients spontaneously develop disease that clinically, immunologically, histologically, and transcriptionally recapitulates eosinophilic esophagitis, a condition characterized by allergic inflammation in the esophagus. Diminished TGFbR signaling impairs epithelial cell maturation, resulting in local expression of inflammatory mediators that drive accumulation and activation of eosinophils, mast cells, T cells, and innate lymphoid cells. Our work reveals a fundamental, non-redundant, cell-intrinsic role for TGFbR signaling in epithelial cells needed to maintain immune homeostasis and prevent allergic inflammation, independent of barrier function or adaptive immune tolerance. Moreover, we demonstrate that epithelial dysfunction alone is sufficient to initiate and perpetuate allergic inflammation, which has implications for the prevention and treatment of allergic diseases. Overall design: 18 total samples were mRNA sequenced, with 9 WT, and 9 TGFBR1M318R mutant mice.
Sample: TGFBR1 mutant replicate 2
SAMN25025973 • SRS11681605 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM5820511
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Esophagi were snap frozen with liquid nitrogen and stored at ‐80°C until RNA isolation. Total RNA was isolated from the inner esophagi of WT or R1 mice (Direct‐zol RNA miniprep Plus; Zymo Research Corp., Irvine CA). PolyA selected mRNA libraries were generated using the Illumina TruSeq Stranded Library protocol, and mRNA samples were pooled and sequenced on a HiSeq2500. PolyA selected mRNA libraries were generated using the Illumina TruSeq Stranded Library protocol, and mRNA samples were pooled and sequenced on a HiSeq2500.
Runs: 1 run, 22.5M spots, 5.7G bases, 1.8Gb
Run# of Spots# of BasesSizePublished
SRR1763092922,532,9355.7G1.8Gb2023-01-15

ID:
19211300

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